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TOPO tutorial, Part B — co-translational protein synthesis
Growing a protein residue by residue on the ribosome with TOPO — the analytic cylinder tunnel and the explicit coarse-grained ribosome, under codon-resolved kinetics.
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GLink Entanglement Tutorial
A practical tutorial for detecting, confirming, and clustering Gaussian-linking entanglements in protein structures.
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Detecting Mirror Images in Coarse-Grained Simulations
A practical checklist to identify mirror-image structures in CG trajectories.
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TOPO tutorial, Part A — simulating folded proteins
A hands-on walkthrough of TOPO's coarse-grained folded-protein workflow — from a single-domain quickstart to multidomain scaling, nscale optimization, and temperature annealing.
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a post with plotly.js
this is what included plotly.js code could look like